Initiative on Model Organism Proteomes (iMOP)
Co-Chairs
Michael Hengartner Chair, University of Zurich
Klaas van Wijk,Cornell University
Steve Briggs, University of California, USA
Andreas Tholey, University of Kiel
Team composition
Co-applicants and their involvement
Several international co-applicants working on different model organisms have been identified during the workshop at the 7th HUPO meeting in Amsterdam:
Pierre-Alain Binz (Genebio, Geneva, Switzerland; pierre-alain.binz@genebio.com)
- Data analysis standardsSteve Briggs (University of California, La Jolla, U.S.A.; sbriggs@ad.ucsd.edu)
- Plant proteomics/cell adaptation to environmental changesMichael Hecker, Dörte Becher (University of Greifswald, Germany; Hecker@uni-greifswald.de; dbecher@uni-greifswald.de)
- Unicellular organisms/prokaryotes (Bacillus subtilis and related gram-positive pathogens e.g. Staphylococcus aureus)Mike MacCoss (University of Washington, U.S.A.; maccoss@uw.edu)
- C. elegans genome annotationAndreas Tholey (Christian-Albrechts-University Kiel, Germany; a.tholey@iem.uni-kiel.de)
- Techniques for proteome analysis, posttranslational modifications, host-pathogen and host-microbiome interactionsUwe Völker (University of Greifswald, Germany; voelker@uni-greifswald.de)
- Proteomics of prokaryotic model organisms and in vivo proteomics of bacterial pathogensRuedi Aebersold (ETH Zurich, Switzerland; aebersold@imsb.biol.ethz.ch)
- Quantitative proteomics and tools for the central data repositoryErich Brunner (Q-MOP, University of Zurich, Switzerland, erich.brunner@imls.uzh.ch)
- Drosophila melanogaster proteomeChristian Ahrens (Q-MOP, University of Zurich, Switzerland; christian.ahrens@imls.uzh.ch)
- Bioinformatics, PTP prediction, and data analysis and integrationGünter Lochnit (Justus-Liebig University, Giessen, Germany; Guenter.Lochnit@biochemie.med.uni-giessen.de)
- C. elegans RNAi and protein analysis technologiesMichael Hengartner, Sabine Schrimpf (University of Zurich, Switzerland; michael.hengartner@imls.uzh.ch, sabine.schrimpf@imls.uzh.ch)
- C. elegans proteome analyses and inter-species comparative studiesChristian von Mering (University of Zurich, Switzerland; mering@imls.uzh.ch)
- Bioinformatics and Systems BiologyRolf Apweiler (EBI Hinxton, UK; apweiler@ebi.ac.uk)
- PRIDE (MS database)Henning Hermjakob (EBI Hinxton, UK; hhe@ebi.ac.uk)
- PRIDE (MS database), IntAct (Molecular Interactions Database), and PSILennart Martens (Ghent University and VIB, Belgium; lennart.martens@UGent.be)
- Computational omics and Systems BiologyAlexey Nesvizhskii (University of Michigan, Ann Arbor, U.S.A.; nesvi@med.umich.edu)
- Databases and statistical applicationsNitin Baliga (Institute for Systems Biology, Seattle, U.S.A.; nbaliga@systemsbiology.org)
- Prokaryotic organisms and Systems BiologyHarvey Millar (The University of Western Australia, Perth, Australia; harvey.millar@uwa.edu.au)
-Plant Proteomics/subcellular proteomesEric Deutsch (Institute for Systems Biology, Seattle, U.S.A.; edeutsch@systemsbiology.org)
-PeptideAtlas (www.peptideatlas.org)Ueli Grossniklaus (University of Zurich, Switzerland;grossnik@botinst.uzh.ch)
-Arabidopsis thaliana, cell type specific proteomics, phophoproteomics, pollen proteome dynamicsEmøke Bendixen (Aarhus University, Denmark; Emoke.Bendixen@agrsci.dk )
- Farm animal proteomics, pig models for obesity and neurodegenerative disorders, porcine gut tissue development.
Multinational Arabidopsis Steering Committee (MASCP):Klaas van Wijk (Cornell University, Ithaca, U.S.A.; kv35@cornell.edu)
- Chloroplast proteomics and biologyAlex Jones (The Sainsbury Laboratory, Norwich, UK; Alex.jones@tsl.ac.uk)
Katja Bärenfaller (ETH Zurich, Switzerland; katja.baerenfaller@ipw.biol.ethz.ch)
Yhong-Hee Shim (Konkuk University, Seoul, Korea; yshim@konkuk.ac.kr)
- C. elegans proteome and germline proteomeContacts
Coordinator: Dr. Sabine Schrimpf, University of Zurich, Switzerland
Email: sabine.schrimpf@imls.uzh.ch
